bcdarwin Ben Darwin

Library for rendering and formatting dataframes

Flexible DICOM converter for organizing imaging data

Serialize Python data to HDF5

High-level DICOM abstractions for Python

Tools for HTML generation and output

Framework for configuring complex applications

Hydra launcher supporting parallel execution based on Joblib.Parallel

Python package for multivariate hypothesis testing

High-level training library for PyTorch

MRI intensity normalization tools

Expose the browser's Canvas API to IPython

Widgets to help facilitate reuse of large datasets across different widgets

Show a nifti image in a webgl 2.0 canvas within a jupyter notebook cell

Insight Segmentation and Registration Toolkit

Hardware accelerated, batchable and differentiable optimizers in JAX

Extra features for Python JSON handling

Block jupyter cell execution while interacting with widgets

Differentiable computer vision library

Wrap legacy APIs in python projects

Optimizer tuned by Google Brain using genetic algorithms

Live training loss plot in Jupyter for Keras, PyTorch, and others

Medical image processing library

Wrapper for loading medical 3D image volumes such as NIFTI or NRRD images

Process orchestration tool designed for functional and integration tests

Magnetoencephelography and electroencephalography in Python

Pytorch framework (based on Ignite) for deep learning in medical imaging

Framework and tools to design, develop and verify AI applications in healthcare imaging

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF

Napari plugin for reading and writing NIFTI files

Package for representing electrophysiology data

Setuptools_scm plugin for nipreps version schemes

Algorithms and containers for time-series analysis in time and spectral domains

Geometric transformations for images and surfaces

Common workflows for MRI (anatomical, functional, diffusion, etc.)

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud

Framework for configuring complex applications

Implementation of open hypergraphs for string diagrams

Python bindings to the OpenSlide library for reading whole-slide microscopy images

Light-weight, flexible, and expressive statistical data testing library

State-of-the art parameter-efficient fine tuning

JPEG-LS plugin for the Python Pillow library

Command-line utility and library that helps with TCP port management

Access Python dictionary as a class with type hinting and autocompletion

Instrument FastAPI with Prometheus metrics

Multiclass confusion matrix library

Python package for working with DICOM files

Medical segmentation file reading and writing

Module for reading and writing basic glTF files

JPEG-LS for Python via CharLS C++ Library

Python framework for decoding JPEG images, with a focus on supporting Pydicom

JPEG and DICOM data used for testing pylibjpeg

JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg

J2K and JP2 plugin for pylibjpeg

Fast DICOM RLE plugin for pylibjpeg

Simple pure-Python reader for NRRD files

Unofficial Python bindings for the NVIDIA Management Library

Python library that wraps the Orthanc REST API

Pure Python library for simple sync with Open Science Framework

Extraction of Radiomics features from 2D and 3D images and binary masks

Python library to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays

Pytest plugin that enables you to test code on a temporary PostgreSQL database

Simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects

Docker client for Python, designed to be fun and intuitive

Metric learning library for PyTorch

Python API to XNAT

Library for quantum circuit rewriting and optimisation using the ZX-calculus

Data cleaning and validation functions for names, languages, identifiers, etc

Compact to regular syntax conversion library for RELAX NG schemata

Fast (zero-copy) and safe (unlike pickle) format for storing tensors

Single-cell analysis in Python which scales to >100M cells

Fuzzy logic toolkit for scientific Python

Report Python session information

Simplified interface to ITK

Use dplyr-like syntax with pandas and SQL

Library for saving/loading, sharing, and deploying scikit-learn based models

Scikit-learn compatible neural net library using Pytorch

Reinforcement learning library using PyTorch focusing on readability and simplicity

Multi-dimensional spatial image data structure for scientific Python

Python port of the R summarytools package for summarizing dataframes

Python tools to create and manipulate SVG files

Python API to query TemplateFlow via pyBIDS

Tensor learning in Python

Helpers to limit number of threads used in native libraries

PyTorch image models, scripts, and pretrained weights

Medical imaging toolkit for deep learning

Trait types for NumPy, SciPy, XArray, and Pandas

Convert between various geometric transformations

Type system for data analysis in Python

Xarray data creation made easy by dataclass

Xarray data creation made easy by dataclass

New XNAT client (distinct from pyxnat) that exposes XNAT objects/functions as Python objects/functions

Create HTML profiling reports from Pandas DataFrames

Simple way to train and use PyTorch models with multi-GPU, TPU, mixed-precision

High-performance image processing library to optimize and extend Albumentations with specialized functions for image transformations

Read/write/validate/query BIDS datasets

2D and 3D image data augmentation for deep learning

Fast runtime type checking for Python

Sampling library designed for ease of use, speed and modularity

2D plotting library for Jupyter based on Grammar of Graphics