bcdarwin Ben Darwin
github.com/bcdarwin · maintains 323 packages (323 directly), sole maintainer of 316, member of 0 teams
323 packages · page 3 of 4
| Package ▼ | Version | Maintainers | # | Teams | Deps | Used by | Used by (transitive) | Status |
|---|---|---|---|---|---|---|---|---|
Wrapper for loading medical 3D image volumes such as NIFTI or NRRD images |
0.0.20 → 0.0.22 |
1 | 18 | 1 | 1 | single outdated | ||
Medical image processing library |
0.5.2 |
1 | 21 | 0 | 0 | single | ||
Live training loss plot in Jupyter for Keras, PyTorch, and others |
0.5.6 → 0.6.1 |
1 | 22 | 0 | 0 | single outdated | ||
Optimizer tuned by Google Brain using genetic algorithms |
0.2.3 → 0.2.5 |
1 | 14 | 1 | 2 | single outdated | ||
Wrap legacy APIs in python projects |
1.5 |
1 | 19 | 2 | 2 | single | ||
Differentiable computer vision library |
0.8.2 → 0.8.3 |
1 | 19 | 1 | 1 | single outdated | ||
Block jupyter cell execution while interacting with widgets |
1.1.0 |
1 | 17 | 1 | 2 | single | ||
Extra features for Python JSON handling |
3.17.3 |
1 | 17 | 0 | 0 | single | ||
Hardware accelerated, batchable and differentiable optimizers in JAX |
0.8.5 |
1 | 26 | 1 | 2 | single | ||
Insight Segmentation and Registration Toolkit |
5.4.6 → 5.4.7 |
1 | 20 | 1 | 2 | single outdated | ||
Show a nifti image in a webgl 2.0 canvas within a jupyter notebook cell |
2.4.4 |
1 | 24 | 0 | 0 | single | ||
Widgets to help facilitate reuse of large datasets across different widgets |
4.3.5 |
1 | 20 | 1 | 3 | single | ||
Expose the browser's Canvas API to IPython |
0.14.3 |
1 | 23 | 0 | 0 | single | ||
MRI intensity normalization tools |
3.0.1 → 4.0.0 |
1 | 22 | 0 | 0 | single outdated | ||
High-level training library for PyTorch |
0.5.4 → 1.1.0 |
1 | 18 | 0 | 0 | single outdated | ||
Python package for multivariate hypothesis testing |
0.5.2 |
1 | 29 | 1 | 2 | single | ||
Hydra launcher supporting parallel execution based on Joblib.Parallel |
1.3.5 |
1 | 19 | 0 | 0 | single | ||
Framework for configuring complex applications |
1.3.5 → 1.3.7 |
1 | 22 | 10 | 17 | single outdated | ||
Tools for HTML generation and output |
0.7.0 |
1 | 20 | 5 | 5 | single | ||
High-level DICOM abstractions for Python |
0.27.0 → 0.28.2 |
1 | 25 | 0 | 0 | single outdated | ||
Serialize Python data to HDF5 |
5.0.3-unstable-2026-07-25 |
1 | 23 | 0 | 0 | single | ||
Flexible DICOM converter for organizing imaging data |
1.5.1 |
1 | 28 | 0 | 0 | single | ||
Library for rendering and formatting dataframes |
0.21.0 → 1.0.0 |
1 | 37 | 0 | 0 | single outdated | ||
Library for writing unit tests for data validation |
1.11.1 → 1.24.0 |
1 | 50 | 0 | 0 | single broken outdated | ||
Package for graph statistical algorithms |
3.4.4 |
1 | 37 | 1 | 1 | single | ||
Advanced AI explainability for computer vision |
1.5.5 → 1.5.7 |
1 | 26 | 0 | 0 | single outdated | ||
Probabilistic time series modeling in Python |
0.17.0 |
1 | 33 | 0 | 0 | single | ||
Grassroots cross-platform DICOM implementation |
3.2.10 |
1 | 12 | 1 | 1 | single | ||
FSL Python library |
3.23.0 → 3.29.1 |
1 | 29 | 0 | 0 | single outdated | ||
Formulas for mixed-effects models in Python |
0.6.2 → 0.9.0 |
1 | 22 | 1 | 1 | single outdated | ||
PyTorch Lightning extension for foundation model experimentation with flexible fine-tuning schedules |
2.13.0 |
1 | 20 | 0 | 0 | single | ||
Async/sync API for FHIR resources |
2.2.0 |
1 | 24 | 0 | 0 | single | ||
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images and point clouds |
1.20.1 |
1 | 20 | 1 | 1 | single | ||
Fast and minimalist 3D viewer using VTK |
3.5.0 |
2 | 15 | 0 | 0 | maintained | ||
Easily evaluate machine learning models and datasets |
0.4.6 |
1 | 27 | 3 | 42 | single | ||
Probabilistic programming language using Tensorflow |
1.3.5 |
1 | 18 | 0 | 0 | single | ||
Lightweight, fast C/C++ library for sequence alignment using edit distance |
1.3.9.post1 |
1 | 18 | 0 | 0 | single | ||
Simple framework to embed references in code |
0.11.2 |
1 | 23 | 0 | 0 | single | ||
Diffusion imaging toolkit for Python |
1.11.0 → 1.12.1 |
1 | 24 | 0 | 0 | single outdated | ||
Python client for DICOMweb RESTful services |
0.61.2 |
1 | 24 | 0 | 0 | single | ||
Library for converting dicom files to nifti |
2.6.2 |
1 | 25 | 0 | 0 | single | ||
Read DICOM files into Numpy arrays |
0.6.5 |
1 | 19 | 0 | 0 | single | ||
Best-effort anonymization for medical images |
0.4.6 → 0.4.12 |
1 | 21 | 0 | 0 | single outdated | ||
DICOM to Nifti conversion preserving metadata |
0.9-unstable-2024-12-05 |
1 | 20 | 1 | 1 | single | ||
Python software implementation and hardware API of CRC32C checksum algorithm |
2.8 → 2.9.post0 |
1 | 17 | 3 | 285 | single outdated | ||
Connected components on discrete and continuous multilabel 3D & 2D images |
3.22.0 → 4.1.0 |
1 | 22 | 0 | 0 | single outdated | ||
Python library for CMA evolution strategy |
0.13.1 |
1 | 19 | 2 | 9 | single | ||
Citation Style Language (CSL) parser for Python |
0.9.0 → 0.11.1 |
1 | 20 | 1 | 1 | single outdated | ||
Library for working with Continuous Integration services |
1.0.0 |
1 | 17 | 1 | 4 | single | ||
Gather continuous integration information on the fly |
0.3.0 → 0.4.0 |
1 | 16 | 1 | 4 | single outdated | ||
Grammar of Graphics scales for bqplot and other Jupyter widgets libraries |
0.3.7 |
1 | 27 | 1 | 2 | single | ||
2D plotting library for Jupyter based on Grammar of Graphics |
0.13.1 |
1 | 28 | 1 | 1 | single | ||
Sampling library designed for ease of use, speed and modularity |
1.7.1 |
1 | 28 | 1 | 1 | single | ||
8-bit CUDA functions for PyTorch |
0.49.2 → 0.50.2 |
2 | 22 | 6 | 11 | maintained outdated | ||
Fast runtime type checking for Python |
0.22.9 |
1 | 18 | 14 | 49 | single | ||
2D and 3D image data augmentation for deep learning |
0.25.1 → 0.25.5 |
1 | 25 | 0 | 0 | single outdated | ||
High-level Bayesian model-building interface |
0.21.0 |
1 | 32 | 0 | 0 | single | ||
Read/write/validate/query BIDS datasets |
0.3.1 → 0.4.10 |
1 | 19 | 0 | 0 | single outdated | ||
High-performance image processing library to optimize and extend Albumentations with specialized functions for image transformations |
0.2.4 → 0.2.21 |
1 | 22 | 1 | 1 | single outdated | ||
Simple way to train and use PyTorch models with multi-GPU, TPU, mixed-precision |
1.13.0 → 1.15.0 |
1 | 30 | 19 | 40 | single outdated | ||
Cross-platform scientific graphics plotting library |
5.15.0 |
1 | 4 | 0 | 0 | single | ||
Various subroutines to format text |
0.62 → 0.63 |
1 | 4 | 1 | 3 | single outdated | ||
MNI MINC perllib (not used much anymore) |
2012-04-13 |
1 | 3 | 5 | 5 | single | ||
Light-weight, flexible, and expressive statistical data testing library |
0.33.1 |
1 | 48 | 0 | 0 | single | ||
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud |
0.18.0 |
1 | 30 | 0 | 0 | single | ||
Timed references for imperative state |
1.1 |
1 | 5 | 2 | 2 | single | ||
Extended Pratt parser |
5.0.1 → 5.0.2 |
1 | 8 | 1 | 1 | single outdated | ||
Algorithms and datastructures for phylogenetics |
0.3.0 |
1 | 15 | 0 | 0 | single | ||
Library for multicore parallel programming |
1.2.5 |
1 | 6 | 1 | 4 | single | ||
Generalized map/reduce for multicore computing |
14.0.1 |
1 | 6 | 0 | 0 | single | ||
Numerical computing library for Ocaml |
1.2 |
1 | 5 | 1 | 1 | single | ||
Numerical computing library for Ocaml |
1.2 |
1 | 12 | 0 | 0 | single | ||
OCaml bindings for the R interpreter |
0.7.0 |
1 | 10 | 0 | 0 | single | ||
OCaml implementation of the Npy format spec |
0.0.9 |
1 | 7 | 1 | 1 | single | ||
Proof assistant based on the λΠ-calculus modulo rewriting |
3.0.0 |
1 | 16 | 0 | 0 | single | ||
OCaml bindings to Gnuplot |
0.7 → 0.8.3 |
1 | 7 | 0 | 0 | single outdated | ||
Minimal/incomplete Ocaml interface to Eigen3, mostly for Owl |
0.4.0 |
1 | 7 | 0 | 0 | single | ||
Embed build information inside executables |
3.23.1 → 3.24.2 |
1 | 6 | 27 | 59 | single outdated | ||
Logical framework based on the λΠ-calculus modulo rewriting |
2.7 |
1 | 7 | 0 | 0 | single | ||
Core pinning library |
2.0.0 |
1 | 6 | 1 | 1 | single | ||
Simple Core-inspired wrapper for standard library Stream module |
1.3.2 |
1 | 9 | 0 | 0 | single | ||
Efficient binder representation in Ocaml |
6.0.0 |
1 | 7 | 0 | 0 | single | ||
Open-source clone of fslmaths |
1.0.20250804 |
1 | 6 | 0 | 0 | single | ||
Software for medical image segmentation, bias field correction, and cortical thickness calculation |
1.0 |
1 | 5 | 0 | 0 | single | ||
Medical image registration software |
2.1.1 |
1 | 7 | 0 | 0 | single | ||
Medical imaging format C API |
3.0.1 |
1 | 4 | 3 | 41 | single | ||
MRI non-uniformity correction for MINC files |
1.12.00-unstable-2023-01-19 |
1 | 9 | 0 | 0 | single | ||
Suite of tools for diffusion imaging |
3.0.8 |
1 | 19 | 0 | 0 | single | ||
Tools for automated registration using the MINC image format |
0.99.70-unstable-2024-10-04 |
1 | 8 | 0 | 0 | single | ||
Medical image registration library and tools |
2.0.0-unstable-2025-02-27 |
1 | 11 | 0 | 0 | single | ||
Collection of Perl and shell scripts for processing MINC files |
1.0.0-unstable-2016-04-20 |
1 | 11 | 0 | 0 | single | ||
Command-line utilities for working with MINC files |
2.3.06-unstable-2024-11-28 |
1 | 12 | 2 | 2 | single | ||
Merge bot for GitLab |
1.3.1 |
2 | 26 | 0 | 0 | maintained | ||
Medical imaging library based on HDF5 |
2.5.0 |
1 | 7 | 15 | 39 | single | ||
A complete implementation of 10918-1 (JPEG) coming from jpeg.org (the ISO group) with extensions for HDR, lossless and alpha channel coding standardized as ISO/IEC 18477 (JPEG XT) |
1.71 |
1 | 2 | 0 | 0 | single | ||
Insight Segmentation and Registration Toolkit |
5.2.1 |
1 | 39 | 1 | 1 | single | ||
Insight Segmentation and Registration Toolkit |
5.4.6 → 5.4.7 |
1 | 39 | 6 | 19 | single outdated | ||
MRI intensity normalization tools |
3.0.1 |
1 | 21 | 0 | 0 | single | ||
Program to normalize intensity of MINC files |
1.2.00-unstable-2023-01-19 |
1 | 9 | 0 | 0 | single | ||
Medical imaging geometry format C API |
0-unstable-2020-07-07 → 1.0.9 |
1 | 7 | 0 | 0 | single outdated |