apraga Alexis Praga
github.com/apraga · maintains 17 packages (17 directly), sole maintainer of 17, member of 0 teams
17 packages
| Package ▲ | Version | Maintainers | # | Teams | Deps | Used by | Used by (transitive) | Status |
|---|---|---|---|---|---|---|---|---|
Next version of the bwa-mem algorithm in bwa, a software package for mapping low-divergent sequences against a large reference genome |
2.3 |
1 | 4 | 0 | 0 | single | ||
Successor of fermi, a whole genome de novo assembler based on the FMD-index for large genomes |
0.1-unstable-2021-05-21 |
1 | 3 | 1 | 1 | single | ||
Wide variety of tools with a primary focus on variant discovery and genotyping |
4.7.0.0 |
1 | 5 | 0 | 0 | single | ||
Compare genetics variants against a gold dataset |
0.3.15 |
1 | 16 | 0 | 0 | single | ||
Aggregates bioinformatics results from multiple samples into a unified report |
1.30 → 1.33 |
1 | 49 | 0 | 0 | single outdated | ||
Manipulate Jim Kent's BigWig and BigBed index files for genomic features |
1.07 |
1 | 9 | 1 | 1 | single | ||
Write Perl Subroutines in Other Programming Languages |
1.5.1 |
1 | 3 | 1 | 1 | single | ||
Color math and conversion library (fork) |
3.0.3 |
1 | 19 | 1 | 1 | single | ||
Python library that makes color math, color scales, and color-space conversion easy |
0.1.0 |
1 | 18 | 0 | 0 | single | ||
Color math and conversion library (fork) |
3.0.3 |
1 | 19 | 2 | 3 | single | ||
Python library that makes color math, color scales, and color-space conversion easy |
0.1.0 |
1 | 18 | 1 | 1 | single | ||
Incremental construction of FM-index for DNA sequences |
0-unstable-2021-02-01 |
1 | 3 | 1 | 1 | single | ||
Useful utilities for dealing with VCF files and sequence data, especially vcfeval |
3.13 |
1 | 9 | 1 | 1 | single | ||
Safer replacements for C library functions that prevent serious security vulnerabilities |
1.2.0-unstable-2024-10-21 → 1.3.0 |
1 | 3 | 1 | 1 | single outdated | ||
Random forest model for splice prediction in genomics |
0-unstable-2023-04-19 |
1 | 3 | 0 | 0 | single | ||
Identify chromosomal rearrangements using Mate Pair or Paired End sequencing data |
3.9.7 |
1 | 23 | 0 | 0 | single | ||
Annotate genetics variants based on genes, transcripts, and protein sequence, as well as regulatory regions |
110 → 113.3 |
1 | 15 | 0 | 0 | single outdated |