natsukium Tomoya Otabi
github.com/natsukium · maintains 351 packages (300 directly), sole maintainer of 247, member of 1 teams
351 packages · page 1 of 4
| Package ▲ | Version | Maintainers | # | Teams | Deps | Used by | Used by (transitive) | Status |
|---|---|---|---|---|---|---|---|---|
SIMD-based C library for fast partial order alignment using adaptive band |
1.5.7.1 |
1 | 3 | 0 | 0 | single | ||
Efficient Estimation of Evolutionary Distances |
1.15 |
1 | 7 | 0 | 0 | single | ||
Software for biomolecular electrostatics and solvation calculations |
3.4.1 |
1 | 6 | 0 | 0 | single | ||
CLI for sakura AppRun |
0.5.0 |
1 | 3 | 0 | 0 | single | ||
One of the fastest and most widely used open-source docking engines |
1.2.7 |
1 | 3 | 0 | 0 | single | ||
C++ API & command-line toolkit for working with BAM data |
2.5.3 |
1 | 6 | 0 | 0 | single | ||
BWK awk modified for biological data |
1.0-unstable-2017-09-11 |
1 | 5 | 0 | 0 | single | ||
Basic Local Alignment Search Tool (BLAST) finds regions of similarity between biological sequences |
2.16.0 → 2.17.0 |
1 | 11 | 0 | 0 | single outdated | ||
High-performance library for gradient boosting on decision trees |
1.2.10 |
2 | 9 | 0 | 0 | maintained | ||
Command line csv viewer |
0.13.0 → 0.15.1 |
1 | 5 | 0 | 0 | single outdated | ||
Commitizen command line utility |
4.3.2 |
1 | 7 | 0 | 0 | single | ||
Language service for Docker Compose documents |
0.2.0 |
1 | 7 | 0 | 0 | single | ||
Docstring generator for Python |
0.10.0 |
1 | 21 | 0 | 0 | single | ||
Better dotenv–from the creator of `dotenv` |
2.31.1 |
2 | 7 | 0 | 0 | maintained | ||
Calculate the most likely secondary structure assignment given the 3D structure of a protein |
4.5.0 → 4.6.1 |
1 | 7 | 0 | 0 | single outdated | ||
Sequence analysis library used by Eddy/Rivas lab code |
0.49 |
1 | 6 | 0 | 0 | single | ||
Rainy clock in your terminal |
0.1.3 |
1 | 4 | 0 | 0 | single | ||
Utilities for indexing and sequence extraction from FASTA files |
1.0.0 |
1 | 2 | 0 | 0 | single | ||
Augment your fish command line with fzf key bindings |
11.0 |
2 | 7 | 0 | 0 | maintained | ||
C-library for calculating Solvent Accessible Surface Areas |
2.1.2 → 2.1.3 |
1 | 7 | 0 | 0 | single outdated | ||
Macromolecular crystallography library and utilities |
0.7.5 |
1 | 11 | 2 | 3 | single | ||
Develop Apps Script Projects locally |
3.3.0 → 3.4.1 |
1 | 7 | 0 | 0 | single outdated | ||
Composite font of Hack and GenJyuu-Goghic |
2.10.0 |
1 | 2 | 0 | 0 | single | ||
Composite font of Hack, GenJyuu-Gothic and nerd-fonts |
2.10.0 |
1 | 2 | 0 | 0 | single | ||
Remote protein homology detection suite |
3.3.0 |
1 | 4 | 0 | 0 | single | ||
Header-only C++/python library for fast approximate nearest neighbors |
0.9.0 |
1 | 3 | 0 | 0 | single | ||
Web-based notebook environment for interactive computing |
7.6.3 |
4 | 104 | 0 | 0 | team-only | ||
Web-based notebook environment for interactive computing |
7.6.3 |
4 | 104 | 0 | 0 | team-only | ||
Wasm powered Jupyter running in the browser |
0.8.5 |
8 | 18 | 0 | 0 | maintained | ||
Fast multiple sequence alignment program |
3.5.1 |
1 | 3 | 0 | 0 | single | ||
Manipulate mmCIF and PDB files |
8.0.1 → 10.0.4 |
1 | 6 | 1 | 1 | single outdated | ||
Header only library that can collect configuration options from command line arguments |
1.4.2 → 2.1.1 |
1 | 3 | 1 | 1 | single outdated | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single broken | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single | ||
An experimental port of OpenAI's Tokenizer to lua |
0.2.5-1 |
1 | 7 | 0 | 0 | single | ||
Open-source Dropbox client for macOS and Linux |
1.9.6 |
3 | 55 | 0 | 0 | maintained | ||
Multiple alignment program for amino acid or nucleotide sequences |
7.526 |
1 | 2 | 1 | 1 | single | ||
Fast, flexible, configuration-based command-line interface for linting Markdown/CommonMark files with the markdownlint library |
0.23.3 |
2 | 7 | 0 | 0 | maintained | ||
Ultra fast and sensitive sequence search and clustering suite |
18-8cc5c |
1 | 6 | 0 | 0 | single | ||
Composite font of Monaspace and IBM Plex Sans JP |
2.0.0 |
1 | 2 | 0 | 0 | single | ||
Composite font of Monaspace and IBM Plex Sans JP |
2.0.0 |
1 | 2 | 0 | 0 | single | ||
Composite font of Monaspace and IBM Plex Sans JP |
2.0.0 |
1 | 2 | 0 | 0 | single | ||
Composite font of Monaspace and IBM Plex Sans JP |
2.0.0 |
1 | 2 | 0 | 0 | single | ||
Run any open-source LLMs, such as Llama 3.1, Gemma, as OpenAI compatible API endpoint in the cloud |
0.6.30 |
2 | 29 | 0 | 0 | maintained insecure | ||
High-performance formatter for the JavaScript ecosystem |
0.68.0 → 0.72.0 |
1 | 11 | 1 | 1 | single outdated | ||
Family of header-only, very fast and memory-friendly hashmap and btree containers |
2.0.0 |
1 | 4 | 2 | 3 | single | ||
Software for determining titration states, adding missing atoms, and assigning charges/radii to biomolecules |
3.7.1 |
1 | 24 | 0 | 0 | single | ||
Modern Python package and dependency manager supporting the latest PEP standards |
2.27.0 → 2.29.2 |
3 | 40 | 0 | 0 | maintained outdated | ||
Fast static code analyzer & language server for Python |
0.0.82 |
1 | 10 | 0 | 0 | single | ||
Python-enhanced molecular graphics tool |
3.1.0 |
2 | 33 | 0 | 0 | maintained | ||
Anthropic's safety-first language model APIs |
1.6.0 → 1.12.0 |
2 | 39 | 13 | 66 | maintained outdated | ||
Custom jupyter widgets made easy |
0.9.21 → 0.11.0 |
1 | 25 | 8 | 133 | single outdated | ||
Microsoft Azure Cognitive Search Client Library for Python |
11.5.2 → 12.0.0 |
1 | 19 | 1 | 1 | single outdated | ||
Build Production-Grade AI Applications |
1.4.33 → 1.4.39 |
2 | 80 | 0 | 0 | maintained insecure outdated | ||
Working with molecular structures in pandas DataFrames |
0.5.2 |
1 | 22 | 0 | 0 | single | ||
High-performance library for gradient boosting on decision trees |
1.2.10 |
2 | 25 | 0 | 0 | maintained | ||
Clarifai gRPC API Client |
12.6.0 |
1 | 21 | 0 | 0 | single | ||
Simplify interfacing with the Cohere API |
7.0.4 → 7.2.0 |
1 | 25 | 3 | 8 | single outdated | ||
Collection of utilities for doing lightweight data wrangling |
0.0.49 |
1 | 22 | 0 | 0 | single | ||
State-of-the-art diffusion models for image and audio generation in PyTorch |
0.38.0 → 0.41.0 |
1 | 25 | 4 | 19 | single outdated | ||
Logging tool for deep learning |
1.1.0 |
1 | 17 | 0 | 0 | single | ||
FreeSASA Python Module |
2.2.1 |
1 | 18 | 0 | 0 | single | ||
Macromolecular crystallography library and utilities |
0.7.5 |
1 | 11 | 2 | 3 | single | ||
Scrape and search localized results from Google, Bing, Baidu, Yahoo, Yandex, Ebay, Homedepot, youtube at scale using SerpApi.com |
2.4.2 |
1 | 17 | 1 | 1 | single | ||
Semantic cache for LLMs and fully integrated with LangChain and llama_index |
0.1.44 |
1 | 18 | 0 | 0 | single | ||
Modular graph-based Retrieval-Augmented Generation (RAG) system |
2.7.0 → 3.2.0 |
1 | 49 | 0 | 0 | single outdated | ||
Library of rust components to add additional capability to graspologic a python library for intelligently building networks and network embeddings, and for analyzing connected data |
1.2.5 → 1.3.1 |
1 | 17 | 1 | 2 | single outdated | ||
Guidance language for controlling large language models |
0.3.1 |
1 | 31 | 0 | 0 | single | ||
Convert --help and --version to man page |
0.0.9 |
1 | 20 | 1 | 3 | single | ||
Header-only C++/python library for fast approximate nearest neighbors |
0.9.0 |
1 | 19 | 2 | 5 | single | ||
Authentication classes to be used with httpx |
0.23.1 |
1 | 23 | 0 | 0 | single | ||
Consume Server-Sent Event (SSE) messages with HTTPX |
0.4.3 |
1 | 23 | 10 | 93 | single | ||
Python package for handling IHM mmCIF and BinaryCIF files |
2.10 → 2.12 |
1 | 19 | 1 | 1 | single outdated | ||
IPython Kernel for Jupyter |
7.3.0 → 7.4.0 |
4 | 28 | 45 | 912 | team-only outdated | ||
Traitlets and widgets to efficiently data tables (e.g. Pandas DataFrame) using the jupyter notebook |
0.3.4 |
1 | 24 | 1 | 1 | single | ||
IPython: Productive Interactive Computing |
9.14.0 → 9.17.1 |
5 | 30 | 70 | 3,849 | maintained outdated | ||
JAX XLA PJRT Plugin for NVIDIA GPUs |
0.11.2 |
7 | 23 | 1 | 1 | maintained | ||
JAX Plugin for CUDA12 |
0.11.2 |
7 | 24 | 0 | 0 | maintained | ||
Fast iterable JSON parser |
0.12.0 → 0.17.0 |
1 | 18 | 3 | 497 | single outdated | ||
Build a book with Jupyter Notebooks and Sphinx |
2.1.7 |
4 | 26 | 0 | 0 | team-only | ||
Build tools for JupyterLab |
1.2.2 → 1.2.3 |
4 | 23 | 5 | 128 | team-only outdated | ||
Jupyter protocol implementation and client libraries |
8.9.1 → 8.10.0 |
4 | 22 | 14 | 915 | team-only outdated | ||
JupyterLab Extension enabling Real-Time Collaboration |
5.0.2 → 5.0.4 |
4 | 26 | 0 | 0 | team-only outdated | ||
JupyterLab/Jupyter Notebook 7+ extension providing user interface integration for real time collaboration |
3.0.4 |
4 | 18 | 1 | 1 | team-only | ||
Jupyter terminal console |
6.6.3 |
4 | 27 | 2 | 71 | team-only | ||
Base package on which Jupyter projects rely |
5.9.1 |
4 | 20 | 19 | 923 | team-only | ||
JupyterLab/Jupyter Notebook 7+ extension integrating collaborative shared models |
3.0.4 |
4 | 18 | 1 | 1 | team-only | ||
Configurable event system for Jupyter applications and extensions |
0.12.0 → 0.12.1 |
4 | 36 | 4 | 137 | team-only outdated | ||
Backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications |
2.21.0 → 2.21.1 |
4 | 45 | 14 | 136 | team-only outdated | ||
Jupyter-server extension integrating collaborative shared models |
3.0.4 |
4 | 23 | 1 | 1 | team-only | ||
Document structures for collaborative editing using Yjs/pycrdt |
4.1.1 |
4 | 20 | 1 | 2 | team-only | ||
Serves multiple Jupyter notebook instances |
5.5.0 → 6.0.1 |
4 | 48 | 6 | 6 | team-only outdated | ||
Jupyter lab environment notebook server extension |
4.6.4 |
4 | 35 | 20 | 125 | team-only | ||
Set of server components for JupyterLab and JupyterLab like applications |
2.28.0 → 2.28.1 |
4 | 31 | 3 | 128 | team-only outdated | ||
Wasm powered Jupyter running in the browser |
0.8.5 → 0.8.6 |
8 | 19 | 1 | 2 | maintained outdated | ||
Jupyter notebooks as Markdown documents, Julia, Python or R scripts |
1.19.5 → 1.19.6 |
4 | 32 | 7 | 9 | team-only outdated | ||
Developer-friendly, serverless vector database for AI applications |
0.39.0 → 0.40.0 |
1 | 36 | 2 | 2 | single outdated |